COVID-19

Cell information

• Human Cell Landscape
• COVID-19 Cell Atlas
• Single Cell Portal
• Non-Human Primate Cell Atlas
  • Paper

COVID-19 projects

• CITIID
• CDC COVID Data tracker
• COG-UK (GitHub repos)
• COVID-19 Data Portal
• covid19db (biomedical-web)
• CUH clinical update and testing.
• DockCov2
• GenOMICC, Genetics Of Mortality In Critical Care
  • paper
• GISAID, Global Initiative for Sharing Avian Influenza Data (login: https://gisaid.org) and nextstran.org.
• HDRUK/covid-19
  • CVD-COVID-UK
  • false positives
  • hospital activity
  • tracking excess deaths
• ICODA, International COVID-19 Data Alliance
• PANGO lineages
• SARS-CoV-2 Research Grade Test Material (GitHub).
• The COVID-19 Host Genetics Initiative
  • Registration
  • Analysis plan
  • GitHub repositories (PCA projection)
  • LDSC and MR analysis
  • Long COVID study
  • Slack channel (icda-office@icda.bio)
  • Results, gs://covid19-hg-analysis/ and gs://covid19-hg-public
  • Paper, (medRxiv), the first and second updates.
  • Web browser
• The RSS task force
• zenodo

Miscellaneous resources

• COVID-19 tracker.
• COVID-19 Projections Using Machine Learning (featured article).
• COVID-19 UniProtKB.
• COVID-19 vaccine tracker.
• CEPI, Coalition for Epidemic Preparedness Innovations.
• CFA, UKRI (funding).
• CSSEGISandData.
• nCov2019.
• NHS COVID-19 vaccination.
• READDI, Rapidly Emerging Antiviral Drug Development Initiative.
• sciinovgroup.
• SHERES.
• https://github.com/rivas-lab/covid19
• VIMI, Viral Interruption Medicines Initiative.

Phenotypes

• Machine-readable version of electronic health record phenotypes (Methods)
• UK biobank COVID-19 data, format and field.

Source: Obermeyer F., et al., Analysis of 6.4 million SARS-CoV-2 genomes identifies mutations associated with fitness. Science, 2022. 376(6599): p. 1327-1332. https://doi.org/10.1126/science.abm1208