INFO - Processing GWAS command line parameters INFO - Building beta for ldsc.txt and /home/jhz22/D/genetics/hakyimlab/PredictDB/GTEx-V7_HapMap-2017-11-29/gtex_v7_Brain_Amygdala_imputed_europeans_tw_0.5_signif.db INFO - Reading input gwas with special handling: ldsc.txt INFO - Processing input gwas INFO - Successfully parsed input gwas in 4.09205794334 seconds INFO - Started metaxcan process INFO - Loading model from: /home/jhz22/D/genetics/hakyimlab/PredictDB/GTEx-V7_HapMap-2017-11-29/gtex_v7_Brain_Amygdala_imputed_europeans_tw_0.5_signif.db INFO - Loading covariance data from: /home/jhz22/D/genetics/hakyimlab/PredictDB/GTEx-V7_HapMap-2017-11-29/gtex_v7_Brain_Amygdala_imputed_eur_covariances.txt.gz INFO - Processing input gwas INFO - Started metaxcan association INFO - 10 % of model's snps found so far in the gwas study INFO - 20 % of model's snps found so far in the gwas study INFO - 30 % of model's snps found so far in the gwas study INFO - 40 % of model's snps found so far in the gwas study INFO - 50 % of model's snps found so far in the gwas study INFO - 60 % of model's snps found so far in the gwas study INFO - 70 % of model's snps found so far in the gwas study INFO - 80 % of model's snps found so far in the gwas study INFO - 80 % of model's snps used INFO - Sucessfully processed metaxcan association in 28.323292017 seconds