R

A summary

Shown below are links to packages I have maintained1, with individual files to be found from https://github.com/jinghuazhao/R.

Packages2 CRAN Vignette GitHub R package documentation
gap https://cran.r-project.org/package=gap gap3 https://github.com/cran/gap https://rdrr.io/cran/gap/
    jss    
    shinygap    
gap.datasets https://cran.r-project.org/package=gap.datasets   https://github.com/cran/gap.datasets https://rdrr.io/cran/gap.datasets/
gap.examples   gap.examples    
    h2    
    pedtodot    
    rnews    
lmm https://cran.r-project.org/package=lmm lmm https://github.com/cran/lmm https://rdrr.io/cran/lmm/
pan https://cran.r-project.org/package=pan pan https://github.com/cran/pan https://rdrr.io/cran/pan/
tdthap https://cran.r-project.org/package=tdthap tdthap https://github.com/cran/tdthap https://rdrr.io/cran/tdthap/
kinship4 https://cran.r-project.org/src/contrib/Archive/kinship/ kinship https://github.com/cran/kinship  

It contains packages CGR which is not available from CRAN and kinship which has additional update.

Installation

You can install these packages either from CRAN, e.g.,

install.packages("pan", repos="https://cran.r-project.org")

or GitHub,

library(devtools)
install_github("jinghuazhao/R/gap", build_vignettes = TRUE)

  1. Contributed work

  2. Featured CRAN task views:

    • Genetics: gap, tdthap
    • Meta-Analysis: gap
    • Social science: lmm, pan

  3. Additional use can be found from a package vignette pQTLtools

  4. Windows package kinship_1.1.4.zip is built from kinship_1.1.4.tar.gz via https://win-builder.r-project.org/.