R

This repository contains packages CGR which is not available from CRAN and kinship which has additional update. Links to packages I have maintained are as shown in the following table, with individual files listed by GitHub.

Packages CRAN GitHub R package documentation
gap https://cran.r-project.org/package=gap https://github.com/cran/gap https://rdrr.io/cran/gap/
gap.datasets https://cran.r-project.org/package=gap.datasets https://github.com/cran/gap.datasets https://rdrr.io/cran/gap.datasets/
gap.examples      
lmm https://cran.r-project.org/package=lmm https://github.com/cran/lmm https://rdrr.io/cran/lmm/
pan https://cran.r-project.org/package=pan https://github.com/cran/pan https://rdrr.io/cran/pan/
pQTLtools      
tdthap https://cran.r-project.org/package=tdthap https://github.com/cran/tdthap https://rdrr.io/cran/tdthap/
kinship1 https://cran.r-project.org/src/contrib/Archive/kinship/ https://github.com/cran/kinship  

Packages gap and tdthap are featured in task view for genetics, while packages lmm and pan are featured in task view for social sciences.

You can install these packages either from CRAN, e.g.,

install.packages("pan", repos="https://cran.r-project.org")

or GitHub,

library(devtools)
install_github("jinghuazhao/R/gap", build_vignettes = TRUE)

I have implemented an earlier version of the g.binread function in GGIR package.

I have contributed to ITHIM injurymodel through a hackathon at MRC and recently to cambridge-ceu.


1 Windows package kinship_1.1.4.zip is built from kinship_1.1.4.tar.gz via https://win-builder.r-project.org/.