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Supplementary information for Sun et al. (2018) Nature

Usage

st4

Format

A data frame with 1980 rows and 31 variables:

Locus.ID

Locus id

SOMAmer.ID

SOMAmer id

Target

Protein

Target.fullname

Protein full name

UniProt

UniProt id

Sentinel.variant*

Sentinel variant

Chr

Chromosome

Pos

Position

Region.start

Region start

Region.end

Region end

Effect.Allele.(EA)

Effect allele

Other.Allele.(OA)

Other allele

EAF

Effect allele frequency

INFO

Information score

cis/.trans

"cis"/"trans"

Mapped.gene

Mapped gene

No..conditionally.significant.variants

Number of conditionally significant variants

Previously.reported

Previously reported

Replicates?

Yes/No

beta

b

SE

SE

p

p value

beta

b

SE

SE

p

p value

beta

b

SE

SE

p

p value

Uncorrelated.with.PAV.(r2≥0.1)

Uncorrelated with PAV

Significant.after.adjusting.for.PAVs

Significant after adjustment for PAVs

Is.a.cis.eQTL.for.same.gene?

Is a cis eQTL for the same gene?

Details

As above.