Believe analysis

Web: https://jinghuazhao.github.io/Believe

CSD3 location: ~/rds/rds-jmmh2-post_qc_data/believe

• TOPMed imputation data by Regeneron for the full ~72k participants. genotype/imputed/*Freeze_Two.GxS.TOPMED_dosages* (.pgen-GT files, .pgen-HDS files and .bgen files pending).
• PCs (counterpart to the sequenced variants, genotype/genomewide/plink/aug_2023??).

A growing list of scripts.

1_desc.sh

1. Descriptive analysis

1_desc.sh is to extract data and to protoype some canonical options for handling relatedness in the study.