Reproducible research

a.k.a Literate programming.

An attempt to model reproducibility is Conceptualizing Reproducibility Using Simulations and Theory (CRUST).

bookmarks for PDF

This is for Ubuntu,

sudo apt install pdftk-java
pdftk src.pdf dump_data output bookmarks.txt
pdftk target.pdf update_info bookmarks.txt output target-bm.pdf

Devezer B, Nardin LG, Baumgaertner B, Buzbas EO. Scientific discovery in a model-centric framework: Reproducibility, innovation, and epistemic diversity. PLoS One. 2019 May 15;14(5):e0216125. doi: 10.1371/journal.pone.0216125. eCollection 2019.