Proteomics
- AlphaFold3, https://github.com/google-deepmind/alphafold3
- CoffeeProt, https://coffeeprot.com/
- FreqPipe, https://fragpipe.nesvilab.org/
- MassiveFold, https://github.com/GBLille/MassiveFold
- MaxQuant, https://maxquant.org/ (Mailing list)
- Mass++, https://mspp.ninja/download/
- MS-GF+, https://msgfplus.github.io/
- OpenFold, https://openfold.io/
- Perseus, https://maxquant.net/perseus/
- Peptigram, http://bioware.ucd.ie/peptigram/
- Protein Structure Prediction Center, https://predictioncenter.org/
- ProteomeXchange, https://www.proteomexchange.org/
- ProteoMapper Online, https://peptideatlas.org/map/
- RFdiffusion, https://github.com/RosettaCommons/RFdiffusion
- Sage, https://sage-docs.vercel.app/
- Sashimi, https://sourceforge.net/projects/sashimi
- Skyline, https://skyline.ms/project/home/begin.view
- Spectranaut, https://biognosys.com/software/spectronaut/