Software Links (Local Copy)

  • 2LD (2-locus LD calculator)
  • 3LOCUS (3-locus haplotype analysis)
  • AFBAC (e-mail, Affected Family-Based Controls)
  • ALLASS (ALLelic ASSociation)
  • Arlequin (population genetics package)
  • ASPEX (TCL, Xmgr)
  • ATRIBUTE (path analysis under a generalized single-locus model)
  • AUTOZ (computation of the Interval Probability of Autozygosity)
  • BAMBE (Bayesian Analysis in Molecular Biology and Evolution)
  • BETA (nonparametric linkage using sib-pairs)
  • BioEdit (BIOlogical sequence alignment EDITor)
  • CHRSIM (CHRomosome-based SIMulation)
  • CLUMP (assessing association using Monte Carlo simulation)
  • Cruise (a,b)
  • CYRILLIC (a pedigree drawing program)
  • dGENE
  • DMAP (Disequilibrium MAPping)
  • ERPA (a program for assessing excessive sharing among relatives)
  • ESPA (Extended Sib Pair Analysis)
  • ETDT (Extended TDT)
  • ET-TDT (Evolutionary Tree TDT)
  • FASTLINK (Faster LINKAGE)
  • FBAT (Family-Based Association Tests)
  • FineMap (GTL)
  • FISHER (analysis of quantitative traits for general pedigrees)
  • GAS (Genetic Analysis System)
  • GASSOC (e-mail, Genetic ASSOCiations)
  • GASP (a program for genetic data simulation)
  • Gcontrol (Association using Genomic Control)
  • GDA (Genetic Data Analysis)
  • GeneHunter (PLUS, TWOLOCUS, IMPRINTING)
  • GenePop (population genetic software package)
  • GTREE (Gene Tree)
  • GhostView
  • GRAPPA (Phylogeny reconstruction from gene orders)
  • HAPLO (HAPLOtype analysis)
  • HAPLOTYPER
  • HMMER (FTP, profile hidden Markov models for biological sequence analysis)
  • HMMgene
  • HOMOG (HOMOgeneity tests)
  • IntraPop (Software for analysis of mitochondrial DNA polymorphisms)
  • KIN (Software for computing KINship coefficients)
  • Lamarc
  • LINKAGE
  • LIPED (LIkelihood in PEDigrees)
  • MAPMAKER (HOMOZ, SIBS)
  • MAPPOP (Software for selective mapping and bin mapping)
  • MEGA (Molecular Evolutionary Genetic Analysis)
  • MEGA2 (Manipulation Environment for Genetic Analyses)
  • MegaLink (interfacing FASTLINK 4.1P, GENEHUNTER 2.0, and SIMPLE)
  • MENDEL (genetic linkage analysis program)
  • MFLINK (Model-free LINKAGE)
  • MIM (Multipoint Interval Mapping)
  • MLD (Multilocus Linkage Disequilibrium)
  • MLIKELY (maximum-likelihood estimation)
  • MORGAN (a collection of software, including Markov chain Monte Carlo)
  • MSA (Multiple Sequence Alignment)
  • MultiSim (Multipoint Multiple trait Simulation)
  • Mx (structuring equation modeling)
  • PAML (Phylogenic Analysis using Maximum Likelihood)
  • PAP (Pedigree Analysis Package)
  • PATHMIX (Path Analysis for Nuclear Families)
  • PDT (Pedigree Transmission Test)
  • PedCheck (Detecting marker typing incompatibilities in pedigree data)
  • Pedraw (drawing pedigrees)
  • PedHunter (a software package used to manage genealogies)
  • PEPI (Program for EPIdemiology)
  • PdpSys (Pedigree Data Processing System)
  • PHASE (a program for reconstructing haplotypes from population genotype data)
  • Phred/Phrap/consed
  • Phylip (phylogenic analysis)
  • POINTER (Segregation Analysis using POINTERs)
  • POPULUS
  • Probability Calculator (NCSS)
  • QMS (DeFries-Fulker Multiple Regression of Sibship QTL Data)
  • QTDT (Quantitative TDT)
  • RELATIVE
  • RELPAIR
  • SAGE (Statistical Analysis for Genetic Epidemiology)
  • SAM (Sequence Alignment and Modeling System)
  • SCOP (Structural classification of proteins, Australia, Cambridge)
  • SIB-PAIR
  • SIGSCAN (SIGnal SCAN)
  • SimCoal (Simulation of Coalescence)
  • SimIBD (IBD calculation using Simulation)
  • SIMLINK (Simulation program for Linkage)
  • SIMULATE (unconditional simulation for linkage)
  • Simple (analyze human pedigree data involving large pedigrees and multiloci)
  • SimWalk2 (Multipoint analyses using Markov chain Monte Carlo and simulated annealing)
  • SKUMIX (maximum likelihood to fit a mixture of up to three distributions)
  • SLINK (Conditional simulation on pedigrees)
  • SNPHAP (SNP haplotyping)
  • SOLAR (Sequential Oligonenic Linkage Analysis Routine)
  • SPLINK (Sib Pair LINKage analysis)
  • Statistical tests and Molecular biology tools (AD Long’s lab)
  • STRUCTURE (a model-based clustering method for inferring population structure)
  • TABLE (tabulating LINKAGE outputs)
  • TLINKAGE (Two-locus LINKAGE)
  • Transmit
  • TreeView
  • VITESSE (Likelihood Calculation on Pedigrees)
  • XDT (Sibling transmission test and quantitative TDT)

Last modified: 14/1/2000 by: Jing Hua Zhao