Caprion panel

Information based on Caprion pilot studies

Usage

data(caprion)

Format

A data frame with 987 rows and 19 variables:

Gene

HGNC symbols, simplified in four instances

Gene.orig

Original HGNC symbol

Protein

Protein name as recorded in the original Caprion annotation

Accession

Original UniProt accession, retained for compatibility

Protein.Description

Detailed protein information

GO.Cellular.Component

Gene Ontology cellular component annotation

GO.Function

Gene Ontology molecular function annotation

GO.Process

Gene Ontology biological process annotation

ensGenes

Ensembl gene identifiers

chrom

Chromosome annotation

starts

Start positions

ends

End positions

chr

Chromosome annotation

start

Minimum start position

end

Maximum end position

Accession.original

Original UniProt accession, explicitly preserved

Accession.current

Current UniProt accession where resolved; NA for the demerged AMY1 entry

Accession.status

Accession resolution status, including unchanged and demerged

Accession.candidates

List-column of candidate current UniProt accessions for historical entries; AMY1 has P0DUB6, P0DTE7 and P0DTE8

Source

Caprion pilot-study annotations and UniProt accession information.

Details

The original Caprion annotations and accession identifiers are preserved. UniProt marks the historical AMY1 accession P04745 as demerged. The candidate current accessions P0DUB6, P0DTE7 and P0DTE8 are recorded for subsequent peptide-level evaluation. These candidates do not establish that all three sequences contributed to the original protein quantification. See the Caprion repository for details of its use.