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Changelog

Source: NEWS.md

pQTLdata 0.6

(2025/3/26)

  • Add logo/favicons from Grok-3, huggingface.co/spaces/not-lain/background-removal, and usethis::use_logo() (jpg), DjVuLibre/3.5.28, ImageMagick/7.1.1-31 (png), and pkgdown::build_favicons().
  • Add reference to swath_ms.
  • Drop GitHub in _pkgdown.yml.
  • Revise pQTLdata.Rmd using ‘CairoPNG’ and options().
  • Revise DESCRIPTION/(Title, URL), README.Rmd after CRAN publication.

pQTLdata 0.5

CRAN release: 2025-03-07

(2025/3/5)

  • Add README.Rmd so as to extract DESCRIPTION/Description to README.md.
  • Automate knitr::knit(“README.Rmd”);devtools::document() and pkgdown::build_site().
  • Revise DESCRIPTION/pQTLdata.R(md)/inst/scripts (suggested by Beni Altmann).
  • Revise _pkgdown.yml.

pQTLdata 0.4

(2025/3/2)

  • CRAN submission
  • Extend Description and add seer1980 to data/datalist.

pQTLdata 0.3

(2025/2/20)

  • Add Olink-Target-96-Assay-List.xlsx (15 panels).
  • Drop olink-explore-ht-assay-list-2023-07-12.xlsx (5,343) for olink-explore-ht-assay-list.xlsx (5,416=5,400+).
  • Add single quotes to software names in Title/Description inside DESCRIPTION (suggested by Uwe Ligges).
  • Minor changes including splitting utils.R and vignette.

pQTLdata 0.2

(2025/2/19)

  • Remove biomaRt, hg19, hg19Tables, st[4|6|18] except their R scripts and revise vignette.
  • Add Ensembl gene ID to caprion & URL to DESCRIPTION but simplify inst/scripts/docs.sh.
  • Add Information on Thermo Fisher Scientific - LSMS / NCI Proteomic Data Commons.
  • Add/remove information for Olink® Target 96 Inflammation Panels.
  • Add inst/README.md, SomaLogic/ given SomaScan.db is developed.

pQTLdata 0.1

(2024/06/10)

  • Add
    • Olink/, EndNote/, scripts/ to inst/.
    • caprion.rda and caprion.R.
    • seer1980.rda and seer1980.R.
    • biomaRt.rda, hg19.rda, hg19Tables.rda, inf1.rda, scallop_inf1, st4.rda, st6.rda, st18.rda, but drop hgTables. Q8NF90 and Q8WWJ7 in inf1.rda were not listed at the UCSC, and replaced with P12034 and P30203 as on UniProt.
    • SomaScan lookup (panels, box, ST4, ST6).
  • Remove characters with iconv.
  • Adopt pkgdown, bookdown-driven vignette, a 1/10 version increment algorithm.
  • Imports knitr, Rdpack.
  • Suggests dplyr, grid, VennDiagram.
  • First release.