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SWATH-MS panel

Source: R/swath_ms.R
swath_ms.Rd

As indicated by Ludwig et al. (2018) , Sequential Windowed Acquisition of All Theoretical Fragment Ion Mass Spectra (SWATH-MS) represents a specific variant of Data-Independent Acquisition (DIA). The panel shown here is curated during INTERVAL pilot study.

Usage

swath_ms

Format

A data frame with 684 rows and 5 variables:

Accession

UniProt id

accList

List of UniProt ids

uniprotName

Protein

ensGene

ENSEMBL gene

geneName

HGNC symbol

Details

As above.

References

Ludwig C, Gillet L, Rosenberger G, Amon S, Collins BC, Aebersold R (2018). “Data-independent acquisition-based SWATH-MS for quantitative proteomics: a tutorial.” Molecular Systems Biology, 14(8), e8126. doi:10.15252/msb.20178126 .