R/phenoscanner only allows for certain number of items supplied. This simple function return
a large number of calls in batches as well as generating SNPIDs.
Usage
genequeries(
genelist,
catalogue = "pQTL",
proxies = "EUR",
p = 5e-08,
r2 = 0.8,
build = 37,
wait = TRUE
)
Arguments
- genelist
a list of SNPs.
- catalogue
"None","eQTL","mQTL","methQTL","pQTL","GWAS".
- proxies
"None", "AFR","AMR","EAS","EUR","SAS".
- p
p value threshold.
- r2
r2 for LD.
- build
37, 38.
- wait
a flag to wait for 1hr for every 50 genes.
Value
The returned value is a list containing genes and results.
Details
Batches are generated and queries are combined into one.
Examples
if (FALSE) { # \dontrun{
# single gene
genequeries("TNFRSF11B")
} # }
