peptide association plot
Usage
peptideAssociationPlot(protein, cistrans, chrlen = gap::hg19, disp = 85)
Arguments
- protein
protein name.
- cistrans
peptide signals and classification.
- chrlen
chromosome length (hg18, hg19, hg38).
- disp
distance from x-axis.
Examples
if (FALSE) {
par(mfrow=c(2,1))
protein <- "PROC"
suffix <- "_dr"
input <- paste0("~/Caprion/analysis/METAL",suffix,"/gz/",protein,suffix,".txt.gz")
annotation <- paste0("~/Caprion/analysis/METAL",suffix,"/vep/",protein,suffix,".txt")
reference <- file.path(find.package("pQTLtools"),"turboman",
"turboman_hg19_reference_data.rda")
pvalue_sign <- 5e-8
plot_title <- protein
pQTLtools::turboman(input, annotation, reference, pvalue_sign, plot_title)
cistrans <- read.csv(paste0("~/pQTLtools/tests","/",protein,".cis.vs.trans"))
load("~/pQTLtools/tests/PROC.rda")
peptideAssociationPlot(protein,cistrans)
}