Function reference • pQTLtools

A summary

pQTLtools _PACKAGE pQTLtools-package: A summary of functions

Functions

genequeries(): phenoscanner genequeries in batches

get.prop.below.LLOD(): Limit of detection analysis

import_OpenGWAS(): Import OpenGWAS

import_eQTLCatalogue(): Import eQTL Catalogue

make_ExpressionSet(): A call to expressionSet class

novelty_check(): Locus novelty check

pqtlMR(): Basic pQTL-MR analysis

qtl_lookup(): QTL lookup

regionqueries(): phenoscanner regionqueries in batches

run_coloc(): Colocalisation analysis

run_TwoSampleMR(): Basic TwoSampleMR analysis

snpqueries(): phenoscanner snpqueries in batches

uniprot2ids(): UniProt IDs to others