Package index
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pQTLtools
pQTLtools-package
- A reference manual
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csq()
- Variant consequence
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genequeries()
- phenoscanner genequeries in batches
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get.prop.below.LLOD()
- Limit of detection analysis
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import_OpenGWAS()
- Import OpenGWAS
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import_eQTLCatalogue()
- Import eQTL Catalogue
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make_ExpressionSet()
- A call to expressionSet class
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novelty_check()
- Locus novelty check
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peptideAssociationPlot()
- peptide association plot
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peptideMapping()
- peptide-to-protein mapping
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pqtlMR()
- Basic pQTL-MR analysis
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protein_altering_variants
- Protein-altering variants
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qtl_lookup()
- QTL lookup
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regionqueries()
- phenoscanner regionqueries in batches
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run_coloc()
- Colocalisation analysis
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run_TwoSampleMR()
- Basic TwoSampleMR analysis
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snpqueries()
- phenoscanner snpqueries in batches
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turboman()
- Manhattan plots
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turboqq()
- QQ plots
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uniprot2ids()
- UniProt IDs to others