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A summary

Some functions are merged into R/gap as shown here, https://jinghuazhao.github.io/R/vignettes/gap.html. The following datasets are available as internal objects: biomaRt, caprion, hg19, hg19Tables, inf1, Olink_NGS, Olink_qPCR, SomaLogic160410, st4, s6, swath_ms.

pQTLtools pQTLtools-package
A summary of datasets and functions

Functions

genequeries()
phenoscanner genequeries in batches
get.prop.below.LLOD()
Limit of detection analysis
import_OpenGWAS()
Import OpenGWAS
import_eQTLCatalogue()
Import eQTL Catalogue
make_ExpressionSet()
A call to expressionSet class
novelty_check()
Locus novelty check
pqtlMR()
Basic pQTL-MR analysis
regionqueries()
phenoscanner regionqueries in batches
run_coloc()
Colocalisation analysis
run_TwoSampleMR()
Basic TwoSampleMR analysis
snpqueries()
phenoscanner snpqueries in batches
uniprot2ids()
UniProt IDs to others

Datasets

Olink_NGS
Olink/NGS panel
Olink_qPCR
Olink/qPCR panels
SomaLogic160410
Somascan panel
SomaScanV4.1
SomaScan v4.1
biomaRt
biomaRt
caprion
Caprion panel
hg19
hg19 information
hg19Tables
hg19 Table
inf1
Olink/INF1 panel
st18
Supplementary table 18
st4
Supplementary table 4
st6
Supplementary table 6
swath_ms
SWATH-MS panel