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A summary

Some functions are merged into R/gap as shown here, https://jinghuazhao.github.io/R/vignettes/gap.html.

pQTLtools _PACKAGE pQTLtools-package
A summary of functions

Functions

genequeries()
phenoscanner genequeries in batches
get.prop.below.LLOD()
Limit of detection analysis
import_OpenGWAS()
Import OpenGWAS
import_eQTLCatalogue()
Import eQTL Catalogue
make_ExpressionSet()
A call to expressionSet class
novelty_check()
Locus novelty check
pqtlMR()
Basic pQTL-MR analysis
qtl_lookup()
QTL lookup
regionqueries()
phenoscanner regionqueries in batches
run_coloc()
Colocalisation analysis
run_TwoSampleMR()
Basic TwoSampleMR analysis
snpqueries()
phenoscanner snpqueries in batches
uniprot2ids()
UniProt IDs to others