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I have converted some functionality of my programs (most are on the Rockefeller list of genetic software), implemented new functions or maintained packages by colleagues into R. as reported in gap: Genetic Analysis Package.
- The examples provided for SAS, Stata and R can be considered as extension to those in Genetic dissection of complex traits In silico: approaches, problems and solutions.
- My work on mixed models is described in the following papers
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- GitHub repositories
- CRAN-related packages (www.r-pkg.org) based on R packages
- Haplotype analysis based on C programs
- miscellaneous collections based on miscellaneous programs
- pQTLdata (vignette)
- pQTLtools
- Articles, bioconductor, ExpressionSet, LocusZoom.js, snakemake, SCALLOP-INF
- manual
- news
- vignette
- JumpStart sites
- Bioconductor contribution, https://contributions.bioconductor.org/index.html
- CRAN submission, https://cran.r-project.org/submit.html
- R Developer Page, https://developer.r-project.org/
I also made a University of London LaTeX thesis class, together with Endnote genetic reference library and keep some notes on MFC programming, some programs for genetic data analysis and R/S counterpart.
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